Hobbie, John E. “Introduction”. In Handbook Of Methods In Aquatic Microbial Ecology, 1-5. Handbook Of Methods In Aquatic Microbial Ecology. Boca Raton,Florida: Lewis Publishers, 1993.

Hobbie, John E, Gaius R Shaver, J. A Laundre, K. Slavik, Linda A Deegan, W. John O'Brien, Steven F Oberbauer, and Sally MacIntyre. “Climate Forcing At The Arctic Lter Site”. In Climate Variability And Ecosystem Response At Long-Term Ecological Research (Lter) Sites., 74-91. Climate Variability And Ecosystem Response At Long-Term Ecological Research (Lter) Sites. New York: Oxford University Press., 2003.

Hobbie, John E, Linda A Deegan, Bruce J Peterson, Edward B Rastetter, Gaius R Shaver, George W Kling, W. John O'Brien, A. E Hershey, et al.. “Long-Term Measurements At The Arctic Lter Site”. In Ecological Time Series, 391-409. 1st ed. Ecological Time Series. New York: Chapman and Hall, 1995.

Hobbie, John E. “Arctic Ecosystem Response To Change”. In Arctic Research Of The United States, 7:2-9. Arctic Research Of The United States, 1993.

Hobbie, John E, Bruce J Peterson, Gaius R Shaver, and W. John O'Brien. “The Toolik Lake Project: Terrestrial And Freshwater Research On Change In The Arctic”. In Proceedings Of The University Of Alaska Confrence, "International Conference On The Role Of Polar Regions In Global Change", June 1990, 378-383. Proceedings Of The University Of Alaska Confrence, "International Conference On The Role Of Polar Regions In Global Change", June 1990. Fairbanks, Alaska: University of Alaska, 1991.

Hobbie, John E, M. Bahr, and A. L Reysenbach. “Ecology At Long-Term Research Sites: Integrating Microbes And Ecosystems”. In Third Edition Of The Asm Manual Of Environmental Microbiology, 182-189. Third Edition Of The Asm Manual Of Environmental Microbiology. ASM Press, 2007.

Hobbie, John E. “Measuring Heterotrophic Activity In Plankton”. In Methods In Microbiology, Volume 22, 235-250. Methods In Microbiology, Volume 22. London: Academic Press, 1990.

Hobbie, John E, and J. Laybourn-Parry. “Heterotrophic Microbial Processes In Polar Lakes”. In Polar Lakes And Rivers: Limnology Of Arctic And Antarctic Aquatic Ecosystems., 197-212. Polar Lakes And Rivers: Limnology Of Arctic And Antarctic Aquatic Ecosystems. Oxford: Oxford University Press, 2008.

Hobbie, John E. “Lter In The Arctic: Where Science Never Sleeps”. In Long Term Ecological Research: Changing The Nature Of Scientists, 91-98. Long Term Ecological Research: Changing The Nature Of Scientists. New York, NY: Oxford University Press, 2016.

Hobbie, John E. “Polar Limnology”. In Lakes And Reservoirs, 63-105. Lakes And Reservoirs. Amsterdam, Netherlands: Elsevier Scientific Publishing Co., 1984.

Hobbie, John E, A. E Hershey, P. W Lienesch, M. E McDonald, George W Kling, and W. John O'Brien. “Studies Of Fresh Waters On The North Slope”. In Fifty More Years Below Zero: Tributes And Meditations For The Naval Arctic Research Laboratory's First Half Century At Barrow, Alaska., 123-128. Fifty More Years Below Zero: Tributes And Meditations For The Naval Arctic Research Laboratory's First Half Century At Barrow, Alaska. Fairbanks, AK: University of Alaska Press, 2001.

Hobbie, John E. “History Of Limnology In Alaska”. In Alaskan Freshwaters, 45-60. Alaskan Freshwaters. NY: Springer-Verlag, 1996.

Hobbie, John E, Gaius R Shaver, Toke T Høye, and Joseph Bowden. “Arctic Tundra”. In Arctic Ecology, 103-132. Arctic Ecology. John Wiley & Sons, Ltd, 2021. doi:https://doi.org/10.1002/9781118846582.ch5.

Hobbie, John E, and T. E Ford. “A Perspective On The Ecology Of Aquatic Microbes”. In Aquatic Microbiology: An Ecological Approach, 1-14. Aquatic Microbiology: An Ecological Approach. Boston: Blackwell Scientific Publications, 1993.