Hobbie, John E. “History Of Limnology In Alaska”. In Alaskan Freshwaters, 45-60. Alaskan Freshwaters. NY: Springer-Verlag, 1996.

Hobbie, John E, and T. E Ford. “A Perspective On The Ecology Of Aquatic Microbes”. In Aquatic Microbiology: An Ecological Approach, 1-14. Aquatic Microbiology: An Ecological Approach. Boston: Blackwell Scientific Publications, 1993.

Hobbie, John E, Bruce J Peterson, Neil D Bettez, Linda A Deegan, W. John O'Brien, George W Kling, G. W Kipphut, William B Bowden, and A. E Hershey. “Impact Of Global Change On Biogeochemistry And Ecology Of An Arctic Freshwater System”. Polar Research 18, no. 2. Polar Research (1999): 207-214. doi:10.1111/j.1751-8369.1999.tb00295.x.

Hobbie, John E. The Ecology Of Tundra Ponds Of The Arctic Coastal Plain: A Community Profile. Fish and Wildlife Service FWS/OBS-83/25, 1984.

Hobbie, John E, M. Bahr, and A. L Reysenbach. “Ecology At Long-Term Research Sites: Integrating Microbes And Ecosystems”. In Third Edition Of The Asm Manual Of Environmental Microbiology, 182-189. Third Edition Of The Asm Manual Of Environmental Microbiology. ASM Press, 2007.

Hobbie, John E, and Erik A Hobbie. “Amino Acid Cycling In Plankton And Soil Microbes Studied With Radioisotopes: Measured Amino Acids In Soil Do Not Reflect Bioavailability”. Biogeochemistry 107, no. 1-3. Biogeochemistry (2012): 339-360. doi:10.1007/s10533-010-9556-9.

Hobbie, John E, Gaius R Shaver, Edward B Rastetter, Jessica E Cherry, Scott J Goetz, Kevin C Guay, William A Gould, and George W Kling. “Ecosystem Responses To Climate Change At A Low Arctic And A High Arctic Long-Term Research Site”. Ambio 46, no. S1. Ambio (2017): 160 - 173. doi:10.1007/s13280-016-0870-x.

Hobbie, John E. “Introduction”. In Handbook Of Methods In Aquatic Microbial Ecology, 1-5. Handbook Of Methods In Aquatic Microbial Ecology. Boca Raton,Florida: Lewis Publishers, 1993.

Hobbie, John E, Linda A Deegan, Bruce J Peterson, Edward B Rastetter, Gaius R Shaver, George W Kling, W. John O'Brien, A. E Hershey, et al.. “Long-Term Measurements At The Arctic Lter Site”. In Ecological Time Series, 391-409. 1st ed. Ecological Time Series. New York: Chapman and Hall, 1995.

Hobbie, John E, and J. Laybourn-Parry. “Heterotrophic Microbial Processes In Polar Lakes”. In Polar Lakes And Rivers: Limnology Of Arctic And Antarctic Aquatic Ecosystems., 197-212. Polar Lakes And Rivers: Limnology Of Arctic And Antarctic Aquatic Ecosystems. Oxford: Oxford University Press, 2008.

Hobbie, John E. “Polar Limnology”. In Lakes And Reservoirs, 63-105. Lakes And Reservoirs. Amsterdam, Netherlands: Elsevier Scientific Publishing Co., 1984.

Hobbie, John E, M. Bahr, Neil D Bettez, and P. A Rublee. “Microbial Food Webs In Oligotrophic Arctic Lakes”. Microbial Biosystems: New Frontiers, Proceedings Of The 8Th International Symposium On Microbial Ecology. Atlantic Canada Society For Microbial Ecology. Microbial Biosystems: New Frontiers, Proceedings Of The 8Th International Symposium On Microbial Ecology. Atlantic Canada Society For Microbial Ecology. Halifax, Canada, 2000.

Hobbie, John E, and Erik A Hobbie. “N-15 In Symbiotic Fungi And Plants Estimates Nitrogen And Carbon Flux Rates In Arctic Tundra”. Ecology 87, no. 4. Ecology (2006): 816-822. doi:10.1890/0012-9658(2006)87%5B816:Nisfap%5D2.0.Co;2.

Hobbie, John E, and George W Kling. Alaska's Changing Arctic: Ecological Consequences For Tundra, Streams And Lakes. Long-Term Ecological Research Network Series. Long-Term Ecological Research Network Series. New York, NY: Oxford University Press, 2014. doi:10.1093/acprof:osobl/9780199860401.001.0001.

Hobbie, John E. “Arctic Ecosystem Response To Change”. In Arctic Research Of The United States, 7:2-9. Arctic Research Of The United States, 1993.

Hobbie, John E, T. L Corliss, and Bruce J Peterson. “Seasonal Patterns Of Bacterial Abundance In An Arctic Lake”. Arctic And Alpine Research 15, no. 2. Arctic And Alpine Research (1983): 253-259. doi:10.2307/1550926.

Hobbie, John E, Bonnie L Kwiatkowski, Edward B Rastetter, D. A Walker, and R. B McKane. “Carbon Cycling In The Kuparuk Basin: Plant Production, Carbon Storage, And Sensitivity To Future Changes”. Journal Of Geophysical Research: Atmospheres 103, no. D22. Journal Of Geophysical Research: Atmospheres (1998): 29065-29073. doi:10.1029/98jd00804.

Hobbie, John E. Limnology Of Tundra Ponds: Barrow, Alaska. Stroudsburg, PA: Dowden, Hutchinson and Ross, 1980.

Hobbie, John E. “Lter In The Arctic: Where Science Never Sleeps”. In Long Term Ecological Research: Changing The Nature Of Scientists, 91-98. Long Term Ecological Research: Changing The Nature Of Scientists. New York, NY: Oxford University Press, 2016.

Hobbie, John E, A. E Hershey, P. W Lienesch, M. E McDonald, George W Kling, and W. John O'Brien. “Studies Of Fresh Waters On The North Slope”. In Fifty More Years Below Zero: Tributes And Meditations For The Naval Arctic Research Laboratory's First Half Century At Barrow, Alaska., 123-128. Fifty More Years Below Zero: Tributes And Meditations For The Naval Arctic Research Laboratory's First Half Century At Barrow, Alaska. Fairbanks, AK: University of Alaska Press, 2001.

Hobbie, John E, Gaius R Shaver, J. A Laundre, K. Slavik, Linda A Deegan, W. John O'Brien, Steven F Oberbauer, and Sally MacIntyre. “Climate Forcing At The Arctic Lter Site”. In Climate Variability And Ecosystem Response At Long-Term Ecological Research (Lter) Sites., 74-91. Climate Variability And Ecosystem Response At Long-Term Ecological Research (Lter) Sites. New York: Oxford University Press., 2003.

Hobbie, John E. “Microbial Control Of Dissolved Organic Carbon In Lakes: Research For The Future”. Hydrobiologia 73. Hydrobiologia (1992): 169-180. doi:10.1007/BF00006999.

Hobbie, John E, S. R Carpenter, Nancy B Grimm, J. R Gosz, and T. R Seastedt. “The U.s. Long Term Ecological Research (Lter) Program”. Bioscience 53, no. 1. Bioscience (2003): 21-32. doi:10.1641/0006-3568(2003)053%5B0021:TULTER%5D2.0.CO;2.

Hobbie, John E, Erik A Hobbie, J. C Weber, J. Shamhart, H. Drossman, and M. H Conte. “Mycorrhizal Fungi Supply Nitrogen To Host Plants In Arctic Tundra And Boreal Forests: 15N Is The Key Signal”. Canadian Journal Of Microbiology 55. Canadian Journal Of Microbiology (2009): 84-94. doi:10.1139/W08-127.

Hobbie, John E. “Scientific Accomplishments Of The Long Term Ecological Research Program: An Introduction”. Bioscience 53, no. 1. Bioscience (2003): 17-20. doi:10.1641/0006-3568(2003)053%5B0017:Saotlt%5D2.0.Co;2.