Hobbie, John E, and John Helfrich. “The Effect Of Grazing By Microprotozoans On Production Of Bacteria”. Archives Of Hydrobiology 31. Archives Of Hydrobiology (1988): 281-288.

Hobbie, John E, Bruce J Peterson, Gaius R Shaver, and W. John O'Brien. “The Toolik Lake Project: Terrestrial And Freshwater Research On Change In The Arctic”. In Proceedings Of The University Of Alaska Confrence, "International Conference On The Role Of Polar Regions In Global Change", June 1990, 378-383. Proceedings Of The University Of Alaska Confrence, "International Conference On The Role Of Polar Regions In Global Change", June 1990. Fairbanks, Alaska: University of Alaska, 1991.

Hobbie, John E. “Measuring Heterotrophic Activity In Plankton”. In Methods In Microbiology, Volume 22, 235-250. Methods In Microbiology, Volume 22. London: Academic Press, 1990.

Hobbie, John E, M. Bahr, and P. A Rublee. “Controls On Microbial Food Webs In Oligotrophic Arctic Lakes”. Arch. Hydrobiol. Spec. Issues Advanc. Limnol 54. Arch. Hydrobiol. Spec. Issues Advanc. Limnol (1999): 61-76. http://www.schweizerbart.de//publications/detail/isbn/9783510470563/Archiv\_Advances\_in\_Limnology\_54\_Fest.

Hobbie, John E, and Erik A Hobbie. “Microbes In Nature Are Limited By Carbon And Energy: The Starving-Survival Lifestyle In Soil And Consequences For Estimating Microbial Rates”. Frontiers In Microbiology 4. Frontiers In Microbiology (2013): 324. doi:10.3389/fmicb.2013.00324.

Hobbie, John E, Gaius R Shaver, Toke T Høye, and Joseph Bowden. “Arctic Tundra”. In Arctic Ecology, 103-132. Arctic Ecology. John Wiley & Sons, Ltd, 2021. doi:https://doi.org/10.1002/9781118846582.ch5.