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Moore, John C. Diversity, Taxonomic Versus Functional. In Encyclopedia Of Biodiversity, 2Nd Edition, 7:648-656. 2nd ed. Encyclopedia Of Biodiversity, 2Nd Edition. Amsterdam, Netherlands: Elsevier Academic Press, 2013. doi:10.1016/b978-0-12-384719-5.00036-8.
Moore, John C. A Biotic Awakening: Responses Of Soil Communities In A Changing Arctic. Cary Institute Of Ecosystem Studies. Cary Institute Of Ecosystem Studies. Millbrook, NY, 2013.
Moore, John C, and Peter C De Ruiter. Invertebrates In Detrital Food Webs Along Gradients Of Productivity. In Invertebrates As Webmasters In Ecosystems. Invertebrates As Webmasters In Ecosystems. Oxford, UK: CABI Publishing, 2000.
Moore, John C, and Peter C De Ruiter. Bottom-Up Control. In Encyclopedia Of Theoretical Ecology, 4:106-112. Encyclopedia Of Theoretical Ecology. University of California Press, 2012.
Moore, John C, A. G Kazachkov, A. G Anders, and C. Willis. The Danger Of Misrepresentations In Science Education. Proceedings Of The 3Rd Internations Girep Seminar 5-9 September, 2005. Proceedings Of The 3Rd Internations Girep Seminar 5-9 September, 2005. Ljbjana, Slovenia, 2006.
Moore, John C, Kevin S McCann, and Peter C De Ruiter. Modeling Trophic Pathways, Nutrient Cycling, And Dynamic Stability In Soils. Pedobiologia 49. Pedobiologia (2005): 499-510. doi:10.1016/j.pedobi.2005.05.008.
Moore, John C, Kevin S McCann, and Peter C De Ruiter. Soil Rhizosphere Food Webs, Their Stability, And Implications For Soil Processes And Ecosystems. In The Rhizosphere: An Ecological Perspective, 101-126. The Rhizosphere: An Ecological Perspective. San Diego, CA: Elsevier Academic Press, 2007.
Moore, John C, Kevin S McCann, H. Setälä, and Peter C De Ruiter. Top-Down Is Bottom-Up: Does Predation In The Rhizosphere Regulate Aboveground Production?. Ecology 84. Ecology (2003): 84-857. doi:10.1890/0012-9658(2003)084%5B0846:TIBDPI%5D2.0.CO;2.
Moore, John C. Lter And Lessons From Networked Lives.. In Long-Term Ecological Research: Changing The Nature Of Scientists.. Long-Term Ecological Research: Changing The Nature Of Scientists. New York, NY: Oxford University Press, 2016.
Moore, John C. Oxford Bibliographies - Ecosystem Ecology. Oxford University Press, 2018. doi:10.1093/OBO/9780199830060-0202.